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Publications

Last updated: November 8, 2024

 

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M. Walton-Raaby, T. Floen, N. Mora-Diez*

Modelling the repair of carbon-centered protein radicals by phenolic antioxidants

Antioxidants, 2024, 13, 1368 (17 pages).

 

M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez*

Calculating the aqueous pKa of phenols: Predictions for antioxidants and cannabinoids

Antioxidants, 2023, 12, 1420 (19 pages).

 

P. Homem-de-Mello*, C. M. Aono, E. de Liandra-Salvador, E. Menezes Clementino de Lima, F. C. Torres Antonio, G. Silva Mol, J. Rosa Souza, M. Zanotto, N. Gasperin, R. L. Gomes Quintino Correa, R. Dias da Cunha, N. Mora-Diez, M. D. Coutinho-Neto

Book Chapter: Design of dyes for energy transformation: from the interaction with biological systems to application in solar cells

Book: Green Chemistry and Computational Chemistry: Shared Lessons in Sustainability, 1st Edition, L. Mammino, editor.

ISBN: 9780128198797
Publication Date: November 17, 2021

 

G. García-Díez, R. Monreal-Corona, N. Mora-Diez*

Complexes of Copper and Iron with Pyridoxamine, Ascorbic Acid and a Model Amadori Compound: Exploring Pyridoxamine’s Secondary Antioxidant Activity

Antioxidants, 2021, 10, 208 (20 pages).

 

G. García-Díez, N. Mora-Diez*

Theoretical Study of the Iron Complexes with Aminoguanidine: Investigating Secondary Antioxidant Activity

Antioxidants, 2020, 9, 756 (18 pages).

 

R. Monreal-Corona, J. Biddlecombe, A. Ippolito, N. Mora-Diez*

Theoretical Study of the Iron Complexes with Lipoic and Dihydrolipoic Acids: Exploring Secondary Antioxidant Activity

Antioxidants, 2020, 9, 674 (21 pages).

 

G. García-Díez, R. Ramis, N. Mora-Diez*

Theoretical Study of the Copper Complexes with Aminoguanidine: Investigating Secondary Antioxidant Activity

ACS Omega, 2020, 5, 14502-14512.

 

H. Plommer, L. Stein, J. N. Murphy, N. Ikpo, L. N. Dawe, N. Mora-Diez, F. M. Kerton*

Copolymerization of Cyclohexene Oxide and CO2 Catalyzed by Aluminum Amino-(bis)Phenolate Complexes

Dalton Trans., 2020, 49, 6884-6895.

 

R. Ramis, R. Casasnovas, J. Ortega-Castro, J. Frau, J. R. Álvarez-Idaboy, N. Mora-Diez*

Modelling the Repair of Carbon-Centered Protein Radicals by the Antioxidants Glutathione and Trolox

New J. Chem., 2019, 43, 2085-2097.

 

R. Ramis, R. Casasnovas, L. Mariño, J. Frau, M. Adrover, B. Vilanova, N. Mora-Diez*, J. Ortega-Castro*

A Density Functional Theory Study of the Free-Radical Scavenging Activity of Aminoguanidine

Int. J. Quantum Chem., 2019, 119:e25911 (8 pages).

 

A. Romero-Silva, N. Mora-Diez*, J. R. Alvarez-Idaboy*

Theoretical Study of the Reactivity and Selectivity of Various Free Radicals with Cysteine Residues

ACS Omega, 2018, 3, 16519-16528.

 

R. Castañeda-Arriaga, J. R. Alvarez-Idaboy*, N. Mora-Diez*

Theoretical Study of the Copper Complexes with Lipoic and Dihydrolipoic Acids

RSC Adv., 2016, 6, 107924-107932.

 

S. Tolosa*, A. Hidalgo, J.A. Sansón, N. Mora-Diez*

Theoretical Determination of Aqueous Acid-Base pK Values: Electronic Structure Calculations and Steered Molecular Dynamic Simulations 

Theo. Chem. Acc., 2016, 135, 251 (10 pages). (corrected)

 

R. Castañeda-Arriaga, A. Domínguez-Castro, J. Lee, J. R. Alvarez-Idaboy*, N. Mora-Diez*

Chemical Repair of Protein Carbon-Centred Radicals: Long-Distance Dynamic Factors

Can. J. Chem., 2016, 94, 1119-1126 (invited paper for a special issue dedicated to Professors Russell Boyd and Arvi Rauk).

 

A. Hidalgo, N. Mora-Diez*

Novel Approach for Predicting Partition Coefficients of Linear Perfluorinated Compounds

Theo. Chem. Acc., 2016, 135, 18 (11 pages).

 

R. Castañeda-Arriaga, N. Mora-Diez*, J. R. Alvarez-Idaboy*

Modelling the Chemical Repair of Protein Carbon-Centered Radicals Formed via Oxidative Damage with Dihydrolipoic Acid

RSC Adv., 2015, 5, 96714-96719.

 

A. Hidalgo, T. Giroday, N. Mora-Diez*

Thermodynamic Stability of Neutral and Anionic PFOAs

Theo. Chem. Acc., 2015, 134, 124 (15 pages).

 

N. Mora-Diez*, Y. Egorova, H. Plommer, P. Tremaine

Theoretical Study of Deuterium Isotope Effects on Acid-Base Equilibria under Ambient and Hydrothermal Conditions

RSC Adv., 2015, 5, 9097-9109.

 

S. Tolosa*, N. Mora-Díez*, A. Hidalgo, J. Sansón

Amide-Imide Tautomerism of Acetohydroxamic Acid in Aqueous Solution: Quantum Calculations and SMD Simulations

RSC Adv., 2014, 4, 44757-44768.

 

T. Giroday, M. M. Montero-Campillo, N. Mora-Diez*

Thermodynamic Stability of PFOS: M06-2X and B3LYP Comparison

Comput. Theor. Chem.  2014, 1046, 81-92.

 

B. Messaoudi, S.M. Mekelleche, N. Mora-Diez*

Theoretical Study of the Complex Reaction of O(3P) with Cis-2-Butene

Theo. Chem. Acc. 2013, 132, 1394 (7 pages).

 

B. Messaoudi, S.M. Mekelleche, J.R. Alvarez-Idaboy, N. Mora-Diez*

Theoretical Study of the Complex Reaction of O(3P) with Trans-2-Butene

Theo. Chem. Acc. 2013, 132, 1366 (7 pages).

 

L. Reyes, I. Nicolas, N. Mora-Diez*, J. R. Alvarez-Idaboy*

Acid-Catalyzed Nucleophilic Additions to Carbonyl Groups: Is the Accepted Mechanism the Rule or an Exception?

J. Org. Chem. 2013, 78, 2327-2335.

 

B. Messaoudi, S.M. Mekelleche*, N. Mora-Diez

Theoretical Study of the Regioselectivity of the Addition of the Triplet Oxygen Atom to Unsymmetrical Substituted Alkenes

J. Theo. Comp. Chem. 2012, 11, 527-535.

 

M. M. Montero-Campillo, N. Mora-Diez*, A. M. Lamsabhi

The Thermodynamic Stability of Neutral and Anionic PFOS: A Gas Phase, n-Octanol and Water Theoretical Study

J. Phys. Chem. A 2010, 114, 10148-10155.

 

C. Morera-Boado, N. Mora-Diez, L. Montero-Cabrera, E. Alonso-Becerra, R. González-Jonte, J.M. García de la Vega*

Interaction of Brassinolide with Essential Amino Acid Residues: A Theoretical Approach

J. Mol. Graph. Mod. 2010, 28, 604-611.

 

N. Mora-Diez*, S. Keller, J.R. Alvarez-Idaboy*

The Baeyer-Villiger Reaction: Solvent Effects on Reaction Mechanisms

Org. Biomol. Chem. 2009, 7, 3682-3690.

 

L. Reyes*, J.R. Alvarez-Idaboy, N. Mora-Diez

Substituent Effects in the Baeyer-Villiger Reaction of Aromatic Ketones: A Theoretical Study

J. Phys. Org. Chem. 2009, 22, 643-649.

 

J.R. Alvarez-Idaboy*, L. Reyes, N. Mora-Diez

The Mechanism of the Baeyer-Villiger Rearrangement: Quantum Chemistry and TST Study Supported by Experimental Kinetic Data

Org. Biomol. Chem. 2007, 5, 3682-3689.

 

I.E. Charif, S.M. Mekelleche*, D. Villemin, N. Mora-Diez

Correlation of Aqueous pKa Values of Carbon Acids with Theoretical Descriptors: A DFT Study

J. Mol. Struct (Theochem) 2007, 818, 1-6.

 

T.N. Brown, N. Mora-Diez*

Computational Determination of Aqueous pKa Values of Protonated Benzimidazoles (Part 2)

J. Phys. Chem. B 2006, 110, 20546-20554.

 

T.N. Brown, N. Mora-Diez*

Computational Determination of Aqueous pKa Values of Protonated Benzimidazoles (Part 1)

J. Phys. Chem. B 2006, 110, 9270-9279.

 

 

Postdoctoral work at the Steacie Institute for Molecular Sciences (2002-2003)

 

N. Mora-Diez, M.L. Senent*, B. García

Ab Initio Study of the Solvent Effects on the Acetohydroxamic Acid Deprotonation Processes

Chem. Phys. 2006, 324, 350-358.

 

S.A. Mitchell*, R.A. McAloney, D. Moffatt, N. Mora-Diez, M.Z. Zgierski,

Second-harmonic generation optical activity of a polypeptide α-helix at the air/water interface  

J. Chem. Phys. 2005, 122, 114707.

 

 

PhD work at Dalhousie University (1997-2001)

 

N. Mora-Diez, R.J. Boyd*

A Computational Study of the Kinetics of the NO3 Hydrogen-Abstraction Reaction From a Series of Aldehydes (XCHO: X = F, Cl, H, CH3)

J. Phys. Chem. A 2002, 106, 384-394.

 

N. Mora-Diez, J.R. Alvarez-Idaboy, R.J. Boyd*

A Quantum Chemical and TST Study of the OH   Hydrogen-Abstraction Reaction from Substituted Aldehydes: FCHO and ClCHO

J. Phys. Chem. A 2001, 105, 9034-9039.

 

J.R. Alvarez-Idaboy, N. Mora-Diez, R.J. Boyd, A. Vivier-Bunge*

On the Importance of Pre-Reactive Complexes in Molecule-Radical Reactions: Hydrogen Abstraction from Aldehydes by OH

J. Am. Chem.  Soc. 2001, 123, 2018-2024.

 

J.R. Alvarez-Idaboy, N. Mora-Diez, A. Vivier-Bunge*

A Quantum Chemical and Classical Transition State Theory. Explanation of Negative Activation Energies in OH Addition to Substituted Ethenes

J. Am. Chem. Soc. 2000, 122, 3715-3720.

 

N. Mora-Diez, R.J. Boyd*, G.L. Heard

Effects of Alkyl Substituents on the Excited States of Naphthalene: Semi-empirical Study

J. Phys. Chem. A 2000, 104, 1020-1029.

 

 

BSc work at Universidad de La Habana (1991-1996)

 

N. Mora-Diez, L.A. Montero*, J. Fabian

Molecular Orbital Modeling of Solvent Effects on Excited States of Organic Molecules

J. Mol. Struct. (Theochem) 1998, 453, 49-57.

 

 

 

N. Mora-Diez

Computational Studies on Topics of Environmental Interest: From Kinetics to Excited States

Ph.D. Thesis, Dalhousie University, Halifax, Nova Scotia, 2001.

 

 

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conference presentations

 

 

INVITED PRESENTATIONS   

Computational Studies of Antioxidant Activity

12th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Vancouver, Canada, July 2022 (invited speaker).

 

Studying Tertiary Antioxidant Activity

45th International Conference of Theoretical Chemists of Latin Expression (Chitel/Quitel), Montréal, Québec, Canada, August 2019 (invited speaker).

 

Deuterium Isotope effects on Acid-Base Equilibria

28th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Windsor, Ontario, Canada, July 2018 (invited speaker).

 

Deuterium Isotope effects on Acid-Base Equilibria

10th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Santiago de Chile, Chile, October 2014 (oral communication).

 

Deuterium Isotope Effects on Acid-Base Equilibria at Ambient and Hydrothermal Conditions

The High-Performance Computing Symposium (HPCS), Halifax, Nova Scotia, June 2014 (invited speaker).

 

Acid-Catalyzed Nucleophilic Additions to Carbonyl Groups: Is the Accepted Mechanism the Rule or an Exception?

18th European Symposium on Organic Chemistry (ESOC), Marseille, France, July 2013 (oral communication).

 

Acid-Catalyzed Nucleophilic Additions to Carbonyl Groups: Is the Accepted Mechanism the Rule or an Exception?

9th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Santiago de Compostela, Spain, July 2011 (invited speaker).

 

The Baeyer-Villiger Reaction: Ionic or Neutral?

Western Canadian Undergraduate Chemistry Conference, Thompson Rivers University, Kamloops, Canada, May 2009 (plenary lecture).

 

Approaches for the Theoretical Prediction of Aqueous Equilibrium Constants

32nd International Congress of Theoretical Chemists of Latin Expression, Côtes de Carthage, Tunisie, Sept 2006 (oral communication).

 

 

 

OTHER PRESENTATIONS  (Since 2018, Presenter underlined)

 

G. García-Díez, M. Clara Cunha, N. Mora-Diez

Predicting the Aqueous pKa of Opioids and Fluorinated Derivatives

Congress on Electronic Structure Principles and Applications (ESPA), Tarragona, Spain, Jun 2024 (poster)

 

M. C. Cunha, M. Luz Sanchez, M. Aguilar, N. Mora-Diez, M. E. Martin

Photophysical behaviour of 2,2’-bipyridine-3,3’-diol: Fluorescence study in solvent mixtures using the ASEP/MD methodology

G. García-Díez, M. Clara Cunha, N. Mora-Diez

Predicting the Aqueous pKa of Opioids and Fluorinated Derivatives

19th Annual TRU Undergraduate Research and Innovation Conference, Mar 2024 (poster).

Science Undergrad Poster Exhibition of Research, TRU, Faculty of Science, Apr 2024 (poster).

30th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Halifax, Canada, Jul 2024 (poster)

 

M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez

Calculating the Aqueous pKa of Phenols: Predictions for Antioxidants and Cannabinoids

62nd Sanibel Symposium, St. Augustine Beach, Florida, USA, Feb 2023 (poster).

 

Z. Jia, M. Walton-Raaby, T. Floen, P. Bouthillier, N. Mora-Diez

Investigating the Antioxidant Activity of Cannabidiol

TRU Undergraduate Research and Innovation Conference, March 2023 (poster).

 

Western Canadian Undergraduate Chemistry Conference (WCUCC), University of Alberta, Edmonton, Canada, May 2023 (poster – Award in Computational Chemistry).

 

Canadian Chemistry Conference and Exhibition (CSC), Vancouver, Canada, Jun 2023 (poster).

 

26th IUPAC International Conference on Physical Organic Chemistry (ICPOC), Tsinghua University, Beijing, China, Aug 2024 (poster)

 

T. Floen, M. Walton-Raaby, Nelaine Mora-Diez

Modelling the Antioxidant Activity of Glutathione

Western Canadian Undergraduate Chemistry Conference (WCUCC), University of Alberta, Edmonton, Canada, May 2023 (poster).

 

Canadian Chemistry Conference and Exhibition (CSC), Vancouver, Canada, Jun 2023 (poster).

 

M. Walton-Raaby, T. Floen, Nelaine Mora-Diez

Modelling the Repair of Protein Radicals by Phenolic Antioxidants

Canadian Chemistry Conference and Exhibition (CSC), Vancouver, Canada, Jun 2023 (poster: Award in Physical & Theoretical Chemistry & RSC Poster Presentation Award).

 

M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez

Calculating the Aqueous pKa of Phenols: Predictions for Antioxidants and Cannabinoids

62nd Sanibel Symposium, St. Augustine Beach, Florida, USA, Feb 2023 (poster).

 

M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez

Calculating the Aqueous pKa of Phenols: Predictions for Antioxidants and Cannabinoids

36th Annual Symposium on Chemical Physics, University of Waterloo, Canada, Nov 2022 (poster).

 

Z. Jia, P. Bouthillier, M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez

Investigating the Antioxidant Activity of Cannabidiol

29th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Kelowna, Canada, Jun 2022 (poster).

 

M. Walton-Raaby, T. Floen, G. García-Díez, N. Mora-Diez

Calculating the Aqueous pKa of Phenols: Predictions for Antioxidants and Cannabinoids

M. Walton-Raaby, T. Floen, Nelaine Mora-Diez

Modelling the Repair of Protein Radicals by Phenolic Antioxidants

TRU Undergraduate Research and Innovation Conference, March 2022 (oral presentation and poster).

 

Western Canadian Undergraduate Chemistry Conference (WCUCC), University of Calgary, Alberta, May 2022 (poster).

 

29th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Kelowna, Canada, Jun 2022 (poster).

 

12th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Vancouver, Canada, Jul 2022 (poster).

 

R. Monreal-Corona, A.A. Ippolito, J.R. Biddlecombe, N. Mora-Diez

Theoretical Study of the Iron Complexes with Lipoic and Dihydrolipoic Acids: Exploring Secondary Antioxidant Activity

G. García-Díez, R. Monreal-Corona, R. Ramis, N. Mora-Diez

Complexes of Copper and Iron with Aminoguanidine, Pyridoxamine, Ascorbic Acid, and a Model Amadori Compound: Exploring Secondary Antioxidant Activity

G. García-Díez, R. Monreal-Corona, M. Mertion, N. Mora-Diez

Predicting the aqueous pKa of benzimidazoles and opioids

29th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Kelowna, Canada, Jun 2022 (poster).

12th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Vancouver, Canada, Jul 2022 (poster).

 

A. Sadeghifar, A. Brown, J. Gauld, J. Hollet, E. Johnson, G. Schreckenbach, S. Wetmore, T. Woo, N. Mora-Diez, G. DiLabio

The panCanadian Computational Chemistry (PC3) Program: A Collaborative Approach to Training Graduate Students in Applied Computational Chemistry

12th Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC), Vancouver, Canada, Jul 2022 (poster).

 

H. Plommer, Y. Egorova, N. Mora-Diez

Deuterium Isotope Effects on Acid-Base Equilibria at Ambient and Hydrothermal Conditions

102nd Canadian Chemistry Conference, Quebec, Canada, Jun 2019 (oral presentation).

 

R. Monreal-Corona, A.A. Ippolito, J.R. Biddlecombe, N. Mora-Diez

Theoretical Study of the Iron Complexes with Lipoic and Dihydrolipoic Acids

14th Annual TRU Undergraduate Research and Innovation Conference, Mar 2019 (poster).

 

G. Garcia-Diez, R. Ramis, N. Mora-Diez

Theoretical Study of the Secondary antioxidant Activity of Aminoguanidine

Annual Undergraduate Research Conference, UBC Okanagan, Kelowna, Canada, Mar 2019 (poster).

 

14th Annual TRU Undergraduate Research and Innovation Conference, Mar 2019 (poster).

 

H. Plommer, Y. Egorova, N. Mora-Diez

Theoretical Study of Deuterium Isotope Effects on Acidity at Ambient and Hydrothermal Conditions

59th Sanibel Symposium, St. Simons Island, Georgia, USA, Feb 2019 (poster)

 

R. Casasnovas, J. Frau, N. Mora-Diez

Macroscopic pKa Prediction of Polyprotic Acids from DFT Calculations: The Case of Acetohydroxamic Acid

59th Sanibel Symposium, St. Simons Island, Georgia, USA, Feb 2019 (poster)

 

R. Casasnovas, C. Sternig, J. Frau, N. Mora-Diez*

Macroscopic pKa Prediction of Polyprotic Acids from DFT Calculations: The Case of Acetohydroxamic Acid

24th IUPAC International Conference on Physical Organic Chemistry (ICPOC), University of Algarve, Faro, Portugal, Jul 2018 (poster, *presenter).

 

28th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Windsor, Ontario, Canada, Jul 2018 (poster, *presenter).

 

11th Congress on Electronic Structure Principles and Applications (ESPA), Toledo, Spain, Jul 2018 (poster).

 

R. Ramis, R. Casasnovas, J. Ortega-Castro, J. Frau, J. R. Álvarez-Idaboy, N. Mora-Diez*

Modelling the Repair of Damaged Proteins by Antioxidants

24th IUPAC International Conference on Physical Organic Chemistry (ICPOC), University of Algarve, Faro, Portugal, Jul 2018 (poster, *presenter).

 

28th Canadian Symposium on Theoretical and Computational Chemistry (CSTCC), Windsor, Ontario, Canada, Jul 2018 (poster, *presenter).

 

11th Congress on Electronic Structure Principles and Applications (ESPA), Toledo, Spain, Jul 2018 (poster).

 

 

 

  

 

 

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